Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002283.1 Corchorus olitorius cultivar O-4 contig02283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5085
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37


Found at i:3113 original size:22 final size:23

Alignment explanation


    Indices: 3088--3134  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 23

       3078 CCATTTTAAC

                                   
       3088 AAATTTAAAC-TATAATTAAAAT
          1 AAATTTAAACATATAATTAAAAT

                  *                 
       3110 AAATTTGAACTATATAATTAAAAT
          1 AAATTTAAAC-ATATAATTAAAAT

             
       3134 A
          1 A

       3135 TATAACATAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  22    9  0.41
  24   13  0.59

ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36


Consensus pattern (23 bp):   
AAATTTAAACATATAATTAAAAT
Done.