Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022833.1 Corchorus olitorius cultivar O-4 contig22866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21087

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7696--7728
2
16.5
2
100
0
66
51
0
0
48
1.00
7797--7871
31
2.5
31
84
2
98
30
24
6
38
1.81
14961--15015
28
2.0
28
85
0
74
50
3
18
27
1.63
15031--15164
7
19.1
7
68
19
66
53
3
23
18
1.60
14971--15192
21
10.6
21
74
15
167
50
4
22
22
1.67
15017--15192
42
4.2
41
82
9
189
50
4
23
21
1.67
15226--15333
35
3.1
34
82
5
146
52
3
15
27
1.60
15226--15347
35
3.5
33
80
8
127
52
4
17
25
1.64
15282--15357
35
2.2
34
81
9
82
53
9
18
18
1.70
15365--15427
25
2.4
26
84
12
85
60
0
22
17
1.36
17153--17290
39
3.6
38
86
3
197
21
17
36
24
1.94
17320--17369
6
8.3
6
100
0
100
16
0
34
50
1.45
20150--20214
32
2.0
32
100
0
130
44
6
15
33
1.71
21051--21086
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!