Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022836.1 Corchorus olitorius cultivar O-4 contig22869, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18326
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:7610 original size:76 final size:76

Alignment explanation


    Indices: 7494--7646  Score: 297
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       7484 CATAATCAGA

                                                                             
       7494 AACAATAGGAAGCACTGCCAGCCTCTCGTCTAGATGCACAATAGGAAGCGTCTGTATTGATTTTA
          1 AACAATAGGAAGCACTGCCAGCCTCTCGTCTAGATGCACAATAGGAAGCGTCTGTATTGATTTTA

                       
       7559 ACATAACCTGG
         66 ACATAACCTGG

                                         *                                   
       7570 AACAATAGGAAGCACTGCCAGCCTCTCGTTTAGATGCACAATAGGAAGCGTCTGTATTGATTTTA
          1 AACAATAGGAAGCACTGCCAGCCTCTCGTCTAGATGCACAATAGGAAGCGTCTGTATTGATTTTA

                       
       7635 ACATAACCTGG
         66 ACATAACCTGG

             
       7646 A
          1 A

       7647 GGAGGAGGTT


Statistics
Matches: 76,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  76   76  1.00

ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25


Consensus pattern (76 bp):   
AACAATAGGAAGCACTGCCAGCCTCTCGTCTAGATGCACAATAGGAAGCGTCTGTATTGATTTTA
ACATAACCTGG
Done.