genome.fa.s22838.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022838.1 Corchorus olitorius cultivar O-4 contig22871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118318

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395--1812	119	3.5	120	86	4	528	30	17	14	37	1.90
2050--2085	19	1.9	18	88	5	54	41	8	22	27	1.82
26375--26565	72	2.7	71	82	5	197	30	17	30	20	1.96
33533--33572	18	2.2	18	86	4	53	45	5	20	30	1.72
38232--38286	21	2.6	21	82	0	56	23	45	18	12	1.83
39362--39661	124	2.4	126	85	5	401	38	15	15	30	1.89
45028--45208	91	2.0	92	90	3	285	32	4	16	46	1.68
45609--45641	2	17.5	2	87	12	52	51	0	0	48	1.00
47357--47396	18	2.2	18	86	4	53	45	5	20	30	1.72
51063--51250	52	3.6	52	86	6	261	30	17	14	37	1.89
55043--55089	16	2.9	16	87	3	58	31	6	38	23	1.80
57109--57149	22	2.0	21	90	9	66	19	0	9	70	1.14
61655--62260	54	11.1	54	85	5	638	26	19	6	47	1.73
61730--62260	276	1.9	271	85	4	728	26	20	6	47	1.73
62245--62349	22	4.8	22	74	6	72	13	30	2	53	1.54
62328--62451	57	2.2	58	94	1	214	24	16	6	52	1.67
66600--66916	38	8.3	38	82	3	361	28	19	18	34	1.95
69542--70029	243	2.0	243	99	0	958	25	17	13	43	1.85
74527--74575	21	2.3	21	82	0	53	18	26	22	32	1.97
79618--79659	15	2.7	15	75	17	50	69	0	16	14	1.20
79704--79854	27	5.6	28	83	10	165	56	1	19	23	1.50
79737--80256	53	9.5	53	69	24	250	50	1	20	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79737--79869	26	5.0	27	89	9	186	55	0	19	24	1.48
79881--79938	26	2.2	26	93	0	98	48	1	20	29	1.60
79810--80009	69	2.8	70	86	10	273	48	1	20	29	1.59
79951--80063	26	4.3	27	87	7	144	52	1	20	25	1.56
79784--80230	167	2.7	159	79	12	404	49	1	20	28	1.56
80074--80131	26	2.2	25	88	8	89	46	1	20	31	1.61
80144--80256	26	4.3	27	89	9	146	53	0	19	25	1.50
79757--80431	193	3.5	194	95	2	1200	49	1	20	28	1.56
80268--80325	26	2.2	26	93	0	98	48	1	20	29	1.60
80198--80381	69	2.6	69	88	7	273	50	1	19	29	1.55
80357--80463	26	4.0	27	76	16	89	50	0	21	28	1.49
80402--80461	30	2.0	30	100	0	120	50	0	20	30	1.49
80624--80670	18	2.6	18	100	0	94	27	10	29	31	1.90
80911--81094	52	3.4	52	91	6	269	45	2	21	30	1.65
80932--81013	26	3.2	26	64	19	71	47	2	20	29	1.63
80940--81021	25	3.2	26	66	13	78	47	1	20	30	1.58
80984--81114	34	4.1	34	70	16	127	45	3	20	30	1.66
80926--81123	59	3.4	58	85	10	282	47	2	20	28	1.63
85896--86036	76	1.9	76	81	3	176	15	34	24	25	1.95
87736--87831	45	2.2	42	85	7	122	35	4	20	39	1.72
97720--97778	30	2.0	30	83	6	77	45	11	10	32	1.74
100862--101005	50	2.9	50	91	2	227	32	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101946--102419	69	6.9	69	89	2	684	25	28	17	28	1.97
103133--103208	29	2.7	27	88	9	109	18	10	30	40	1.84
107707--107731	13	1.9	13	100	0	50	36	8	16	40	1.77
108942--108992	15	3.3	15	89	10	84	21	0	19	58	1.39
109307--109400	45	2.2	43	88	7	138	38	22	4	35	1.74
110537--110561	12	2.1	12	100	0	50	24	24	28	24	2.00
110816--110856	2	21.0	2	95	5	75	48	0	0	51	1.00
112639--112675	2	18.0	2	94	5	65	48	0	2	48	1.15
112763--112803	18	2.3	18	100	0	82	26	19	4	48	1.69
114351--114505	79	2.0	79	100	0	310	24	20	9	46	1.79

Tables:   1

The End!