Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022839.1 Corchorus olitorius cultivar O-4 contig22872, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2417
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:1280 original size:24 final size:24

Alignment explanation


    Indices: 1231--1290  Score: 79
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       1221 TTGAACATAT

                            *       
       1231 TTAATTATATTGATATTCAGGAAG
          1 TTAATTATATTGATATCCAGGAAG

                                     
       1255 TTAATTATATTGATATCCATGG-AG
          1 TTAATTATATTGATATCCA-GGAAG

              *          
       1279 TTGATTAT-TTGA
          1 TTAATTATATTGA

       1291 ACAAGATTTA


Statistics
Matches: 33,  Mismatches: 2, Indels: 3
        0.87            0.05        0.08

Matches are distributed among these distances:
  23    4  0.12
  24   27  0.82
  25    2  0.06

ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45


Consensus pattern (24 bp):   
TTAATTATATTGATATCCAGGAAG
Done.