genome.fa.s22840.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022840.1 Corchorus olitorius cultivar O-4 contig22873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36201

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057--3097	21	1.9	22	90	5	66	24	31	9	34	1.88
5573--5622	15	3.3	15	80	2	55	72	14	0	14	1.14
6221--6411	50	3.8	50	90	1	276	32	16	14	36	1.89
7012--7444	50	8.7	50	93	1	681	29	26	13	29	1.94
7456--7636	50	3.6	50	83	1	220	36	10	25	27	1.89
7456--7636	100	1.8	100	84	2	247	36	10	25	27	1.89
7903--7977	28	2.7	27	77	4	87	18	18	28	34	1.95
13169--13250	27	3.1	26	85	5	110	17	19	3	59	1.51
13254--13329	35	2.2	34	95	2	118	25	15	3	55	1.58
13363--13689	21	15.5	21	68	16	155	23	21	5	50	1.69
13433--13551	41	2.9	40	87	3	157	21	21	4	53	1.62
13457--13577	41	2.9	39	82	11	129	21	23	3	51	1.63
13593--13711	15	8.2	15	66	31	73	24	20	4	51	1.65
13542--13752	36	5.9	36	77	12	177	24	20	4	50	1.67
13613--13679	29	2.4	28	77	5	80	25	20	2	50	1.62
13542--13698	72	2.2	71	89	6	246	23	21	4	50	1.67
13593--13709	51	2.3	51	91	4	184	23	20	4	51	1.65
22212--22258	24	1.9	25	86	4	69	40	10	6	42	1.65
29020--29453	69	6.3	69	90	1	622	29	15	28	26	1.96
29165--29262	27	4.3	23	65	19	60	29	13	30	26	1.94
29778--29828	24	2.1	24	100	0	102	21	11	15	50	1.76
30085--30214	50	2.6	49	85	2	188	39	15	13	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31197--31249	15	3.3	16	79	12	56	7	13	5	73	1.23

Tables:   1

The End!