Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022846.1 Corchorus olitorius cultivar O-4 contig22879, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8234
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27


Found at i:1699 original size:18 final size:18

Alignment explanation


    Indices: 1666--1711  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       1656 ATCTTAAGTA

                              
       1666 AAACTAAATG--CAATGC
          1 AAACTAAATGTACAATGC

              *   *           
       1682 AATCTATATGTACAATGC
          1 AAACTAAATGTACAATGC

                        
       1700 AAACTAAATGTA
          1 AAACTAAATGTA

       1712 AACTAAATGC


Statistics
Matches: 24,  Mismatches: 4, Indels: 2
        0.80            0.13        0.07

Matches are distributed among these distances:
  16    8  0.33
  18   16  0.67

ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26


Consensus pattern (18 bp):   
AAACTAAATGTACAATGC

Found at i:1746 original size:14 final size:15

Alignment explanation


    Indices: 1722--1750  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1712 AACTAAATGC

                           
       1722 TAAACGAAAAAGAAA
          1 TAAACGAAAAAGAAA

                           
       1737 TAAA-GAAAAAGAAA
          1 TAAACGAAAAAGAAA

       1751 AACTAACTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.76, C:0.03, G:0.14, T:0.07


Consensus pattern (15 bp):   
TAAACGAAAAAGAAA
Done.