Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022853.1 Corchorus olitorius cultivar O-4 contig22886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20046

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2453--2905
22
20.6
22
73
6
276
38
16
9
35
1.81
2501--2641
65
2.2
65
83
2
167
36
21
9
32
1.86
2520--2663
65
2.2
66
83
5
193
34
21
11
32
1.89
3592--3653
21
2.9
21
73
2
61
40
17
6
35
1.76
3740--3970
22
10.5
22
72
8
132
37
15
8
38
1.77
3895--4008
44
2.6
44
81
4
113
33
19
8
38
1.82
3990--4081
22
4.2
22
77
0
85
29
22
10
36
1.88
3990--4081
44
2.1
44
87
0
130
29
22
10
36
1.88
4096--4325
22
10.4
22
71
11
141
36
16
9
37
1.81
4138--4311
66
2.6
66
79
6
174
35
17
9
37
1.83
4890--5024
67
2.0
67
88
0
198
39
11
10
38
1.76
5136--5302
22
7.5
22
72
4
138
38
8
19
32
1.83
5356--5420
21
3.0
22
86
6
87
35
6
21
36
1.79
8085--8780
88
7.9
88
89
1
1022
40
18
27
13
1.88
8347--8769
40
9.8
39
67
19
128
40
18
27
13
1.88
17992--18021
1
30.0
1
100
0
60
0
0
0
100
0.00

Tables:   1

The End!