genome.fa.s22855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022855.1 Corchorus olitorius cultivar O-4 contig22888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23074

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2030--2593	54	10.5	54	89	3	771	25	16	22	35	1.94
2080--3504	108	13.3	108	78	9	781	26	17	21	33	1.96
2880--3019	35	4.0	35	94	1	219	29	12	18	39	1.88
2489--3527	319	3.2	317	73	12	886	27	17	21	32	1.96
2489--3500	54	19.0	53	75	10	721	27	17	21	32	1.96
3981--4027	24	2.0	24	95	0	85	63	8	14	12	1.50
5037--5148	20	5.8	19	68	24	67	25	14	0	58	1.42
5587--6101	54	9.6	54	81	5	539	28	17	22	31	1.97
7602--7704	34	2.8	35	83	13	120	27	11	1	59	1.43
7606--7695	20	4.8	19	71	19	82	27	12	2	57	1.46
7602--7700	17	5.5	17	73	17	92	27	11	2	59	1.42
8133--8649	54	9.7	53	79	9	489	29	18	21	30	1.97
8136--8595	160	2.9	159	81	7	520	29	18	21	30	1.97
8133--8649	108	4.8	105	81	7	542	29	18	21	30	1.97
10415--10508	20	4.5	21	76	10	86	27	12	1	58	1.41
10400--10512	37	3.0	36	78	11	102	24	14	0	60	1.40
10394--10501	20	5.5	19	69	25	66	25	13	0	59	1.41
13597--13655	11	5.7	10	77	18	59	40	1	20	37	1.63
13608--13643	19	1.9	18	88	5	54	41	0	22	36	1.54
13596--13655	30	2.0	30	90	6	95	40	1	20	38	1.62
17198--17226	15	2.0	15	93	6	51	6	10	13	68	1.37
17896--17931	18	2.1	18	89	5	56	47	5	11	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19028--19063	19	1.9	18	88	5	54	41	0	22	36	1.54
20593--20892	27	12.7	26	68	21	139	46	1	22	30	1.59
20546--20681	71	1.9	71	98	0	263	44	1	23	30	1.63
20646--20701	20	2.8	20	97	0	103	46	0	25	28	1.53
20575--20771	91	2.2	90	97	0	367	44	0	23	30	1.57
20666--20965	70	4.1	70	84	9	361	47	1	21	29	1.61
20680--20989	140	2.1	146	87	7	443	49	1	20	28	1.59
20934--21036	43	2.4	42	85	4	127	46	3	20	29	1.68
21168--21278	34	3.2	34	80	10	118	50	0	19	28	1.54
21182--21293	34	3.2	35	86	7	156	47	0	19	32	1.56
21182--21319	61	2.1	66	84	11	178	47	0	21	30	1.56
22795--22838	16	2.8	16	82	0	61	36	38	15	9	1.80
23035--23074	2	21.0	2	85	10	57	50	0	2	47	1.14

Tables:   1

The End!