Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022856.1 Corchorus olitorius cultivar O-4 contig22889, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45393

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
308--398
16
5.7
16
74
10
96
37
39
14
8
1.77
308--397
32
2.8
32
91
0
144
36
40
14
8
1.77
3668--3706
15
2.6
15
79
0
51
25
15
30
28
1.96
11474--11501
14
2.0
14
100
0
56
14
57
28
0
1.38
18772--18892
27
4.9
27
68
17
91
47
1
22
28
1.61
18725--18891
71
2.4
71
97
0
316
45
1
22
29
1.63
19700--19733
16
2.1
17
88
5
52
38
14
2
44
1.61
36677--36716
15
2.6
16
88
4
55
62
12
10
15
1.54
39018--39055
19
2.1
19
90
5
60
34
21
7
36
1.82
41916--41948
11
2.8
12
90
9
50
3
24
54
18
1.57
45187--45226
15
2.6
16
88
4
55
62
12
10
15
1.54

Tables:   1

The End!