Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022859.1 Corchorus olitorius cultivar O-4 contig22892, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26201

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1799--2020
40
5.5
40
76
12
134
39
18
30
11
1.86
1799--1915
41
2.9
41
81
7
125
38
19
29
11
1.88
1895--2363
40
10.8
42
67
16
217
40
17
27
14
1.89
1881--2376
88
5.7
88
87
2
686
40
17
27
14
1.89
2156--2323
48
3.7
48
75
12
190
38
17
29
14
1.90
11243--11280
19
2.0
19
89
0
58
23
44
13
18
1.85
14181--14609
52
9.3
44
76
12
282
48
1
19
30
1.56
14181--14396
90
2.4
91
87
3
294
50
1
19
28
1.56
14322--14482
18
8.7
18
69
14
94
49
0
20
29
1.49
14313--14505
70
3.0
62
82
12
244
49
0
20
29
1.53
14398--14516
34
3.4
34
68
8
105
47
0
21
30
1.56
14365--14534
70
2.4
70
95
0
304
48
0
20
30
1.54
14398--14655
104
2.4
106
76
17
241
48
0
20
31
1.55
14463--14609
25
5.7
25
67
19
88
46
1
19
31
1.58
14572--14638
35
1.9
35
88
8
102
46
1
20
31
1.60
14565--14819
87
3.0
85
78
16
289
49
2
19
28
1.60
14609--14876
26
9.8
26
69
21
117
49
1
20
28
1.59
14609--14876
53
4.9
51
72
15
159
49
1
20
28
1.59
14765--14873
54
2.0
53
84
5
139
46
1
22
29
1.62
25918--26025
27
4.0
27
96
0
198
19
13
22
44
1.86

Tables:   1

The End!