Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022860.1 Corchorus olitorius cultivar O-4 contig22893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8813
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:8742 original size:130 final size:131

Alignment explanation


    Indices: 8523--8813  Score: 503
    Period size: 130  Copynumber: 2.2  Consensus size: 131

       8513 ACAATAATTC

                      *  * *                    *                *           
       8523 AAAGTCGTTGTCTTAGTGATTTTGATGGTATTTTACCCAACGAATTTTTTAATTGTTGCCAATGC
          1 AAAGTCGTTGCCTAAATGATTTTGATGGTATTTTACACAACGAATTTTTTAATCGTTGCCAATGC

                 *                                                           
       8588 TTACAGTTTTCGTAACAACAAAAACAAAGTCGTTGCGAAATCACAATCTATTCGTAACAATTTTA
         66 TTACACTTTTCGTAACAACAAAAACAAAGTCGTTGCGAAATCACAATCTATTCGTAACAATTTTA

             
       8653 T
        131 T

                                                       *       *             
       8654 AAAGTCGTTGCCTAAATGATTTTGATGGTATTTTACACAAC-ACTTTTTTAGTCGTTGCCAATGC
          1 AAAGTCGTTGCCTAAATGATTTTGATGGTATTTTACACAACGAATTTTTTAATCGTTGCCAATGC

                                                                             
       8718 TTACACTTTTCGTAACAACAAAAACAAAGTCGTTGCGAAATCACAATCTATTCGTAACAATTTTA
         66 TTACACTTTTCGTAACAACAAAAACAAAGTCGTTGCGAAATCACAATCTATTCGTAACAATTTTA

             
       8783 T
        131 T

                                          
       8784 AAAGTCGTTGCCTAAATGATTTTGATGGTA
          1 AAAGTCGTTGCCTAAATGATTTTGATGGTA


Statistics
Matches: 152,  Mismatches: 8, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 130  115  0.76
 131   37  0.24

ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36


Consensus pattern (131 bp):   
AAAGTCGTTGCCTAAATGATTTTGATGGTATTTTACACAACGAATTTTTTAATCGTTGCCAATGC
TTACACTTTTCGTAACAACAAAAACAAAGTCGTTGCGAAATCACAATCTATTCGTAACAATTTTA
T
Done.