Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022862.1 Corchorus olitorius cultivar O-4 contig22895, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4334
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:381 original size:76 final size:75

Alignment explanation


    Indices: 231--381  Score: 164
    Period size: 76  Copynumber: 2.0  Consensus size: 75

        221 ACAAGGACCC

                                                               *           * 
        231 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTG-CTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT

            *          
        296 GGGCAGTGTCA
         65 AGGCAGTGTCA

                    *     *                                           **     
        307 CGACTCCAGCTGGGTGCCCACATGGTTTG-TGTGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
          1 CGACTCCACCTGGGCGCCCACATGG-TTGCT-TG-AGCACCCATGTGGTTT-GCCTGAGAACCCA

                   *     
        369 GATAGGCTGTGTC
         62 GATAGGCAGTGTC

        382 TTAGCTCATC


Statistics
Matches: 63,  Mismatches: 8, Indels: 8
        0.80            0.10        0.10

Matches are distributed among these distances:
  75    5  0.08
  76   53  0.84
  77    5  0.08

ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25


Consensus pattern (75 bp):   
CGACTCCACCTGGGCGCCCACATGGTTGCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGATA
GGCAGTGTCA
Done.