Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022863.1 Corchorus olitorius cultivar O-4 contig22896, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5661
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.31


Found at i:785 original size:46 final size:46

Alignment explanation


    Indices: 732--840  Score: 218
    Period size: 46  Copynumber: 2.4  Consensus size: 46

        722 TTAGATAAAA

                                                          
        732 CTCTTGATCCAGTGTGAATTATCCCTTTTACTCTTTAAATAATTAC
          1 CTCTTGATCCAGTGTGAATTATCCCTTTTACTCTTTAAATAATTAC

                                                          
        778 CTCTTGATCCAGTGTGAATTATCCCTTTTACTCTTTAAATAATTAC
          1 CTCTTGATCCAGTGTGAATTATCCCTTTTACTCTTTAAATAATTAC

                             
        824 CTCTTGATCCAGTGTGA
          1 CTCTTGATCCAGTGTGA

        841 TAATTACTCA


Statistics
Matches: 63,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   63  1.00

ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42


Consensus pattern (46 bp):   
CTCTTGATCCAGTGTGAATTATCCCTTTTACTCTTTAAATAATTAC
Done.