Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022865.1 Corchorus olitorius cultivar O-4 contig22898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8278
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:1093 original size:27 final size:27

Alignment explanation


    Indices: 1034--1087  Score: 99
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1024 GCACTTAGGT

                *                      
       1034 CATTTAGGGGCATTTTGGTCATTTTTA
          1 CATTCAGGGGCATTTTGGTCATTTTTA

                                       
       1061 CATTCAGGGGCATTTTGGTCATTTTTA
          1 CATTCAGGGGCATTTTGGTCATTTTTA

       1088 AGTTCACATT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.19, C:0.13, G:0.22, T:0.46


Consensus pattern (27 bp):   
CATTCAGGGGCATTTTGGTCATTTTTA

Found at i:7074 original size:22 final size:22

Alignment explanation


    Indices: 7024--7076  Score: 56
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       7014 TGCTTTCTGA

                              *   
       7024 TTAATTGTTTTCTTTAATTTTC
          1 TTAATTGTTTTCTTTAATATTC

              *                     
       7046 TTGATTGTTTTC-TTAGATAATT-
          1 TTAATTGTTTTCTTTA-AT-ATTC

                     
       7068 TTAATTGTT
          1 TTAATTGTT

       7077 AGATTGGTTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  21    3  0.12
  22   21  0.81
  23    2  0.08

ACGTcount: A:0.21, C:0.06, G:0.09, T:0.64


Consensus pattern (22 bp):   
TTAATTGTTTTCTTTAATATTC
Done.