Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022866.1 Corchorus olitorius cultivar O-4 contig22899, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2710
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25


Found at i:676 original size:15 final size:15

Alignment explanation


    Indices: 656--689  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        646 AAGTTAGGAT

                  *        
        656 ATGACATATGTGGAA
          1 ATGACACATGTGGAA

                         * 
        671 ATGACACATGTGGGA
          1 ATGACACATGTGGAA

                
        686 ATGA
          1 ATGA

        690 TAAGTTTCGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.38, C:0.09, G:0.29, T:0.24


Consensus pattern (15 bp):   
ATGACACATGTGGAA
Done.