Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022868.1 Corchorus olitorius cultivar O-4 contig22901, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9337
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32


Found at i:57 original size:23 final size:23

Alignment explanation


    Indices: 23--68  Score: 67
    Period size: 23  Copynumber: 2.0  Consensus size: 23

         13 ACTTCAAGAG

                                   
         23 AAGCAAGTGTCGACTAAAGAGGA
          1 AAGCAAGTGTCGACTAAAGAGGA

                              *     
         46 AAGCAA-TAGTCGACTAAGGAGGA
          1 AAGCAAGT-GTCGACTAAAGAGGA

         69 CGCACTTCAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  22    1  0.05
  23   20  0.95

ACGTcount: A:0.43, C:0.13, G:0.30, T:0.13


Consensus pattern (23 bp):   
AAGCAAGTGTCGACTAAAGAGGA

Found at i:7665 original size:14 final size:14

Alignment explanation


    Indices: 7630--7678  Score: 50
    Period size: 14  Copynumber: 3.6  Consensus size: 14

       7620 GAGTCACATA

                          
       7630 TTTTC-AAAA-GAT
          1 TTTTCAAAAATGAT

               *           
       7642 TTTCCAAAAAATGAT
          1 TTTTC-AAAAATGAT

                         *
       7657 TTTTCAAAAATG-G
          1 TTTTCAAAAATGAT

                     
       7670 TTTTCAAAA
          1 TTTTCAAAA

       7679 TTTGTTTTCA


Statistics
Matches: 31,  Mismatches: 3, Indels: 5
        0.79            0.08        0.13

Matches are distributed among these distances:
  12    4  0.13
  13    9  0.29
  14   11  0.35
  15    7  0.23

ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39


Consensus pattern (14 bp):   
TTTTCAAAAATGAT
Done.