Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022883.1 Corchorus olitorius cultivar O-4 contig22916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7462
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:4133 original size:7 final size:7

Alignment explanation


    Indices: 4121--4145  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       4111 ACAATTGAGT

                   
       4121 TTTTCCC
          1 TTTTCCC

                   
       4128 TTTTCCC
          1 TTTTCCC

                   
       4135 TTTTCCC
          1 TTTTCCC

                
       4142 TTTT
          1 TTTT

       4146 AATTTCATTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (7 bp):   
TTTTCCC
Done.