Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022886.1 Corchorus olitorius cultivar O-4 contig22919, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13619
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:4123 original size:10 final size:10

Alignment explanation


    Indices: 4108--4136  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

       4098 GTGATATTTG

                      
       4108 TGAATGTGTC
          1 TGAATGTGTC

                      
       4118 TGAATGTGTC
          1 TGAATGTGTC

                     
       4128 TGAATGTGT
          1 TGAATGTGT

       4137 GTTTGAAGTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.21, C:0.07, G:0.31, T:0.41


Consensus pattern (10 bp):   
TGAATGTGTC

Found at i:5327 original size:15 final size:14

Alignment explanation


    Indices: 5302--5332  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       5292 ATATATTGGA

                          
       5302 TAAATAATAATTAT
          1 TAAATAATAATTAT

                           
       5316 TAAATAAATAATTAT
          1 TAAAT-AATAATTAT

              
       5331 TA
          1 TA

       5333 TTTATTTAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    5  0.31
  15   11  0.69

ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42


Consensus pattern (14 bp):   
TAAATAATAATTAT
Done.