Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022887.1 Corchorus olitorius cultivar O-4 contig22920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37135

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3841--3929
26
3.4
26
93
3
144
48
4
16
30
1.66
3893--4149
35
7.3
35
87
5
365
50
2
19
27
1.59
4371--4870
35
14.0
35
84
5
610
53
3
18
24
1.61
4371--4870
73
7.0
70
86
4
610
53
3
18
24
1.61
4924--5083
57
2.8
57
84
0
205
50
7
14
28
1.70
4981--5081
19
5.2
20
71
18
56
45
8
15
29
1.77
6295--6337
21
2.1
20
82
4
50
69
4
18
6
1.29
8289--8344
28
2.0
28
86
3
78
19
7
12
60
1.55
12692--12770
29
2.6
30
80
10
88
31
7
26
34
1.85
26695--26745
22
2.3
22
83
6
59
49
5
31
13
1.66
26809--26924
54
2.1
54
88
0
169
33
14
18
33
1.91
26909--27290
35
10.9
35
91
1
597
28
13
20
38
1.90
27263--27900
53
11.9
53
81
5
657
27
18
22
32
1.97
27263--27883
215
2.9
211
83
6
700
27
18
22
32
1.97
27260--27904
108
6.0
107
81
8
554
27
17
22
32
1.96
30407--30442
6
6.0
6
86
0
54
47
2
16
33
1.61
36068--36092
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!