Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022899.1 Corchorus olitorius cultivar O-4 contig22932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1725
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30


Found at i:624 original size:33 final size:33

Alignment explanation


    Indices: 582--648  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        572 TAAGAACCTA

                                             
        582 CGAAAACAATAGTACAAGTTAAATCTTTTCCAG
          1 CGAAAACAATAGTACAAGTTAAATCTTTTCCAG

                                             
        615 CGAAAACAATAGTACAAGTTAAATCTTTTCCAG
          1 CGAAAACAATAGTACAAGTTAAATCTTTTCCAG

             
        648 C
          1 C

        649 ATATTGAAAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27


Consensus pattern (33 bp):   
CGAAAACAATAGTACAAGTTAAATCTTTTCCAG
Done.