genome.fa.s22908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022908.1 Corchorus olitorius cultivar O-4 contig22941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48696

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328--1389	25	2.4	25	81	8	70	37	14	25	22	1.92
1373--1749	50	7.5	50	83	3	445	37	11	25	25	1.89
1997--2054	26	2.2	26	96	0	107	44	6	3	44	1.47
4606--4671	33	2.0	33	100	0	132	33	15	15	36	1.88
6628--6759	45	2.9	45	85	0	156	45	7	12	34	1.71
8446--8483	2	19.0	2	100	0	76	50	0	0	50	1.00
10409--10485	28	2.7	28	82	8	84	27	19	11	41	1.86
15156--15393	132	1.8	132	88	0	368	37	13	15	33	1.87
15154--15441	132	2.2	128	81	3	335	35	13	15	35	1.87
15154--15520	132	2.8	128	79	6	319	35	13	14	36	1.85
17081--17155	30	2.5	31	82	4	98	37	20	12	30	1.89
17656--17725	32	2.2	32	94	0	122	32	7	11	48	1.66
28000--28041	22	1.9	22	85	0	57	38	26	21	14	1.91
28495--28549	24	2.3	23	82	11	67	61	1	7	29	1.33
28672--28721	16	3.1	16	78	13	57	38	32	22	8	1.83
29742--29782	21	1.9	22	90	5	66	46	26	14	12	1.80
30431--30473	16	2.8	15	77	19	52	37	34	18	9	1.83
31885--31940	27	2.1	27	100	0	112	60	10	10	17	1.57
32645--32815	54	3.2	53	91	4	281	33	25	15	25	1.95
32818--32868	26	2.0	26	88	0	75	33	27	19	19	1.96
32845--33347	54	9.3	54	86	3	629	31	22	17	28	1.97
33313--33861	35	15.8	35	89	2	741	39	19	14	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33851--34050	54	3.7	54	87	2	267	35	18	16	30	1.93
35084--35162	37	2.1	39	85	4	108	36	13	13	35	1.85
35335--35385	21	2.4	22	83	12	70	7	19	3	68	1.30
35858--35899	21	2.0	21	90	0	66	2	11	4	80	0.95
44224--44306	22	3.8	22	76	6	78	37	9	12	40	1.75
44191--44305	44	2.6	44	77	8	119	39	10	13	36	1.80
44294--44318	13	1.9	13	100	0	50	48	16	4	32	1.64
44268--44313	22	2.1	22	87	0	65	43	13	6	36	1.69
46399--46523	52	2.4	52	97	0	232	23	24	13	38	1.91
48586--48643	22	2.7	22	89	2	91	15	36	8	39	1.78

Tables:   1

The End!