Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022916.1 Corchorus olitorius cultivar O-4 contig22949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9701
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30


Found at i:6781 original size:21 final size:21

Alignment explanation


    Indices: 6757--6812  Score: 103
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       6747 GCCACAACCG

                     *           
       6757 AGCCATGCCAAGGCAGGCACC
          1 AGCCATGCCGAGGCAGGCACC

                                 
       6778 AGCCATGCCGAGGCAGGCACC
          1 AGCCATGCCGAGGCAGGCACC

                          
       6799 AGCCATGCCGAGGC
          1 AGCCATGCCGAGGC

       6813 CATGGCCCGG


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   34  1.00

ACGTcount: A:0.25, C:0.38, G:0.32, T:0.05


Consensus pattern (21 bp):   
AGCCATGCCGAGGCAGGCACC

Found at i:8321 original size:21 final size:21

Alignment explanation


    Indices: 8278--8323  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       8268 CCAAATTAGG

                     *     *     
       8278 TTTAGATTTCAATTTCTTGTT
          1 TTTAGATTTAAATTTATTGTT

                                  
       8299 TTTAGATTTAAGATTTATT-TT
          1 TTTAGATTTAA-ATTTATTGTT

                
       8320 TTTA
          1 TTTA

       8324 TGCATCTTAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  21   16  0.73
  22    6  0.27

ACGTcount: A:0.24, C:0.04, G:0.09, T:0.63


Consensus pattern (21 bp):   
TTTAGATTTAAATTTATTGTT
Done.