Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022920.1 Corchorus olitorius cultivar O-4 contig22953, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25165

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810--859
18
2.8
18
100
0
100
46
12
16
26
1.81
2736--2764
2
14.5
2
100
0
58
48
0
0
51
1.00
3551--3591
18
2.3
18
87
12
66
26
0
0
73
0.84
3551--3582
16
1.9
17
93
6
57
25
0
0
75
0.81
3962--4030
25
2.8
24
93
4
120
15
13
27
43
1.84
4547--4580
16
2.1
17
94
5
61
20
0
5
73
1.04
4801--4945
39
3.8
38
88
5
195
33
17
28
20
1.95
4801--4973
39
4.6
37
80
8
172
31
18
30
20
1.96
6675--6773
36
2.8
36
88
0
144
29
25
28
17
1.97
8795--8863
25
2.8
24
91
4
111
17
11
27
43
1.83
11927--11952
4
6.5
4
100
0
52
23
0
0
76
0.78
13095--13132
11
3.5
11
85
10
51
57
2
0
39
1.12
14518--14622
52
2.0
52
98
0
201
33
16
20
30
1.94
21099--21236
72
1.9
72
91
2
224
41
16
19
22
1.90
21350--21789
51
8.6
51
88
3
275
33
12
24
30
1.92
21287--21787
102
4.9
103
84
5
371
33
12
23
30
1.92
21350--21787
153
2.9
152
85
3
585
33
12
23
30
1.92

Tables:   1

The End!