Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022922.1 Corchorus olitorius cultivar O-4 contig22955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29


Found at i:402 original size:27 final size:27

Alignment explanation


    Indices: 345--403  Score: 68
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        335 CTCATTATAG

                                      *
        345 GGGTAAAATAGTAATTTTACCAATCAG
          1 GGGTAAAATAGTAATTTTACCAATCAC

                  *                      
        372 GGGTAATATAGTAAATTTGT-CC-ATCAC
          1 GGGTAAAATAGT-AATTT-TACCAATCAC

                 
        399 GGGTA
          1 GGGTA

        404 TTTTGGTAAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  27   20  0.71
  28    7  0.25
  29    1  0.04

ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31


Consensus pattern (27 bp):   
GGGTAAAATAGTAATTTTACCAATCAC
Done.