Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022925.1 Corchorus olitorius cultivar O-4 contig22958, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14056
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:12938 original size:36 final size:36

Alignment explanation


    Indices: 12891--12960  Score: 113
    Period size: 36  Copynumber: 1.9  Consensus size: 36

      12881 TTCAATAACC

                         *      *               
      12891 TTACATCTTTTGTGATTTTGGTTATCATATTTCTTA
          1 TTACATCTTTTGTAATTTTGATTATCATATTTCTTA

                  *                           
      12927 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACATCTTTTGTAATTTTGATTATCATATTTCT

      12961 CCAAAATCTC


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.21, C:0.10, G:0.09, T:0.60


Consensus pattern (36 bp):   
TTACATCTTTTGTAATTTTGATTATCATATTTCTTA

Found at i:14008 original size:25 final size:24

Alignment explanation


    Indices: 13974--14020  Score: 85
    Period size: 25  Copynumber: 1.9  Consensus size: 24

      13964 ACGTTTGCAC

                                     
      13974 AAATACCTAAGAATTTGAATTAAAA
          1 AAATACCTAAGAATTT-AATTAAAA

                                  
      13999 AAATACCTAAGAATTTAATTAA
          1 AAATACCTAAGAATTTAATTAA

      14021 TGTAAGTATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    6  0.27
  25   16  0.73

ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30


Consensus pattern (24 bp):   
AAATACCTAAGAATTTAATTAAAA
Done.