Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022930.1 Corchorus olitorius cultivar O-4 contig22963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 806

Length: 1344
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28


Found at i:568 original size:29 final size:29

Alignment explanation


    Indices: 526--589  Score: 101
    Period size: 29  Copynumber: 2.2  Consensus size: 29

        516 AGATTTATAA

                           * *          *
        526 GGAATTATGTAGCACGTTTATTGGTAGAT
          1 GGAATTATGTAGCACATATATTGGTAGAC

                                         
        555 GGAATTATGTAGCACATATATTGGTAGAC
          1 GGAATTATGTAGCACATATATTGGTAGAC

                  
        584 GGAATT
          1 GGAATT

        590 TTAATGATTA


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  29   32  1.00

ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34


Consensus pattern (29 bp):   
GGAATTATGTAGCACATATATTGGTAGAC
Done.