Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022931.1 Corchorus olitorius cultivar O-4 contig22964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56369

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1182--1327
60
2.4
60
83
7
154
45
15
16
23
1.85
1347--1399
22
2.3
23
84
12
74
49
11
5
33
1.62
2901--2927
2
13.5
2
100
0
54
48
0
0
51
1.00
6180--6230
23
2.3
22
80
12
59
68
5
23
1
1.22
9416--9450
6
5.7
6
96
3
61
0
48
0
51
1.00
17429--17457
13
2.1
14
93
6
51
41
0
0
58
0.98
23054--23087
5
7.0
5
96
3
61
79
0
20
0
0.73
34065--34126
32
1.9
32
100
0
124
35
9
4
50
1.57
34291--34928
321
2.0
321
97
0
1204
39
15
23
22
1.92
41968--42003
19
1.9
18
88
5
54
33
22
2
41
1.68
50963--51034
35
2.1
35
91
0
117
23
22
29
25
1.99

Tables:   1

The End!