Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022934.1 Corchorus olitorius cultivar O-4 contig22967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71886

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3158--3418
106
2.5
106
90
3
395
40
8
8
41
1.67
3908--3947
2
20.5
2
94
5
73
50
0
0
50
1.00
9038--9070
16
2.1
16
88
11
50
69
0
0
30
0.88
9335--9385
2
26.5
2
92
7
88
49
0
0
50
1.00
9443--9517
22
3.4
22
77
3
80
37
10
9
42
1.72
9538--9595
23
2.5
23
94
0
107
39
15
3
41
1.64
11111--11172
27
2.3
26
84
15
74
48
0
6
45
1.28
11225--11274
2
25.0
2
84
8
66
50
2
2
46
1.24
11225--11268
19
2.3
19
92
0
70
50
0
2
47
1.13
13952--14027
33
2.3
33
86
8
102
43
23
9
23
1.82
13987--14116
33
3.9
33
75
6
120
42
21
9
26
1.83
14002--14128
66
1.9
66
88
3
193
40
22
9
27
1.84
15768--15894
22
5.9
21
72
9
80
37
15
10
37
1.82
15817--15907
22
4.2
20
75
10
65
34
19
9
36
1.85
20883--20979
49
2.0
49
93
4
169
25
9
8
56
1.58
33586--33619
11
2.8
12
86
13
52
44
8
0
47
1.34
34563--34601
20
2.0
20
85
10
53
28
5
2
64
1.28
35048--35258
22
9.5
22
75
11
171
34
9
18
38
1.82
35049--35876
66
12.9
66
69
17
252
38
9
17
35
1.81
35045--36143
44
25.1
44
66
18
234
37
9
17
36
1.81
35263--35653
22
17.7
22
67
17
154
40
9
15
34
1.81
35755--35919
84
1.9
86
83
11
214
39
8
15
36
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35735--36286
22
25.3
22
66
14
128
39
9
15
35
1.79
35881--35958
23
3.4
23
83
1
95
35
5
19
39
1.74
37407--37445
20
2.0
20
85
10
53
28
5
2
64
1.28
37611--37821
22
9.5
22
71
15
134
36
9
17
36
1.82
37608--37784
66
2.7
66
84
8
225
36
9
17
36
1.83
37826--38239
22
18.7
21
68
16
153
39
9
15
35
1.80
37826--37987
66
2.5
65
79
8
175
37
7
17
37
1.78
38345--38770
22
19.6
22
68
13
174
37
10
15
35
1.82
38450--38567
60
2.0
61
86
1
166
42
8
15
33
1.77
38431--38589
82
1.9
83
81
1
194
41
9
15
33
1.80
38510--38613
45
2.3
44
78
1
109
37
10
15
36
1.82
38662--38728
23
3.0
23
82
2
73
31
11
17
38
1.87
41499--41537
5
7.8
5
100
0
78
20
58
0
20
1.39
45102--45127
3
8.7
3
100
0
52
69
0
30
0
0.89
48368--48461
49
1.9
48
82
2
116
34
19
8
38
1.82
51666--51737
28
2.5
29
90
4
119
40
9
12
37
1.76
52863--53122
127
2.0
130
89
2
400
49
1
10
38
1.48
60347--60381
13
2.6
14
90
4
54
17
11
25
45
1.81
61249--61283
18
1.9
18
94
0
61
51
11
8
28
1.67
61402--61441
18
2.3
17
91
4
62
50
0
0
50
1.00
61410--61456
18
2.6
18
83
13
60
55
0
0
44
0.99
61483--61578
35
2.7
35
90
0
156
40
17
16
25
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70169--70348
22
7.9
22
67
16
71
36
11
8
43
1.71
70265--70321
23
2.5
23
94
0
96
40
10
7
42
1.66
70332--70389
22
2.7
21
76
7
62
24
12
10
53
1.68
71812--71867
27
2.0
28
82
3
69
41
3
5
50
1.43

Tables:   1

The End!