Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022940.1 Corchorus olitorius cultivar O-4 contig22973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1652
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40


Found at i:50 original size:12 final size:11

Alignment explanation


    Indices: 16--57  Score: 57
    Period size: 11  Copynumber: 3.7  Consensus size: 11

          6 ATATATACTA

                       
         16 GAATAAAAAAT
          1 GAATAAAAAAT

                   *   
         27 GAATAAACAAT
          1 GAATAAAAAAT

              *         
         38 GTTATAAAAAAT
          1 G-AATAAAAAAT

                    
         50 GAATAAAA
          1 GAATAAAA

         58 CAAAAAGACA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  11   17  0.65
  12    9  0.35

ACGTcount: A:0.67, C:0.02, G:0.10, T:0.21


Consensus pattern (11 bp):   
GAATAAAAAAT
Done.