Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022941.1 Corchorus olitorius cultivar O-4 contig22974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25032

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3186--3237
13
3.8
13
72
18
52
38
13
11
36
1.81
5453--5487
17
2.1
16
89
5
52
2
17
0
80
0.84
19942--20046
39
2.7
38
88
5
158
49
6
18
25
1.71
22012--22053
5
8.8
5
79
10
52
57
2
0
40
1.12
22009--22053
23
2.0
23
86
8
65
57
2
0
40
1.11
22006--22053
10
5.2
9
82
7
53
58
2
0
39
1.10
22547--23179
22
28.4
22
69
11
272
36
16
9
38
1.80
23021--23144
65
1.9
65
81
6
153
37
11
12
38
1.78
22999--23146
43
3.5
43
81
10
139
37
12
11
37
1.80
22999--23172
87
2.0
87
80
11
200
37
14
11
36
1.83
23276--23327
22
2.4
22
93
0
86
40
11
9
38
1.74
23313--23415
22
4.8
21
75
10
73
34
11
12
40
1.80
23651--23722
22
3.3
22
78
0
72
43
16
9
30
1.80
24601--24649
23
2.2
23
85
7
66
32
16
8
42
1.77

Tables:   1

The End!