Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022945.1 Corchorus olitorius cultivar O-4 contig22978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72905

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1414--1438
13
1.9
13
100
0
50
40
4
0
56
1.18
2350--2459
53
2.1
53
92
0
184
48
18
10
22
1.79
2664--2955
43
6.8
44
84
6
361
42
25
9
21
1.84
2665--2952
84
3.4
85
86
7
363
42
26
10
21
1.84
2665--2946
128
2.2
127
94
0
492
42
26
9
21
1.83
3069--3109
2
20.5
2
89
0
64
46
2
2
48
1.28
7704--8079
126
3.0
126
97
0
707
33
16
18
31
1.93
9644--9734
30
3.0
30
96
0
173
28
14
30
26
1.95
14968--15026
27
2.2
27
100
0
118
45
15
5
33
1.68
26735--26770
12
2.9
12
87
4
54
27
0
8
63
1.23
26730--26765
6
6.2
6
90
3
56
30
0
2
66
1.06
30159--30227
21
3.3
21
83
4
86
47
27
13
11
1.76
35668--35692
8
3.1
8
100
0
50
48
12
28
12
1.76
48276--48318
6
7.2
6
94
0
59
39
0
48
11
1.40
48276--48317
12
3.5
12
90
0
66
40
0
50
9
1.35
48789--48825
6
6.3
6
90
3
58
32
2
0
64
1.07
52113--52157
21
2.1
21
91
0
72
15
11
15
57
1.64
53140--53185
22
2.1
22
100
0
92
34
23
8
32
1.86
53324--53428
52
2.0
52
100
0
210
35
5
24
34
1.79
54890--54919
14
2.1
14
93
0
51
23
46
0
30
1.52
55092--55126
1
35.0
1
100
0
70
0
0
0
100
0.00
69582--69714
49
2.8
50
83
9
147
27
18
6
47
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70452--70494
18
2.4
18
88
0
59
32
37
18
11
1.87
72082--72224
76
1.9
76
81
8
175
18
29
27
25
1.98

Tables:   1

The End!