genome.fa.s22949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022949.1 Corchorus olitorius cultivar O-4 contig22982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63264

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3852--3877	8	3.2	8	100	0	52	76	0	0	23	0.78
7153--7307	21	7.4	21	94	1	249	29	17	27	25	1.97
8151--8197	26	1.9	24	87	12	69	27	27	4	40	1.75
9743--9823	33	2.5	33	81	4	83	23	8	22	45	1.79
9776--9872	33	3.0	32	83	7	115	23	8	24	43	1.81
11615--11727	21	5.4	20	92	4	163	30	17	26	25	1.98
15202--15345	76	1.9	76	81	2	173	18	27	27	26	1.98
17153--17186	17	2.0	17	94	0	59	76	20	0	2	0.92
21402--21489	42	2.1	42	91	4	142	45	3	13	37	1.61
21402--21464	22	3.0	21	67	6	56	44	3	14	38	1.61
21410--21474	20	3.2	20	70	8	67	41	1	15	41	1.56
21444--21613	50	3.4	50	81	8	193	44	4	13	37	1.63
22404--22551	48	3.1	48	90	2	237	13	23	20	42	1.87
22482--22666	69	2.7	68	89	2	273	14	22	16	46	1.83
24221--24261	20	2.0	20	100	0	82	46	19	24	9	1.80
24647--24720	27	2.7	28	82	2	96	39	24	16	20	1.92
24960--25044	27	3.2	27	70	9	84	25	22	10	41	1.86
24956--25159	50	4.0	52	83	5	193	25	25	12	36	1.91
25022--25159	50	2.8	50	92	0	222	25	26	13	35	1.92
25192--25228	11	3.5	11	79	20	51	51	32	8	8	1.61
28154--28179	13	2.0	13	100	0	52	38	15	15	30	1.88
30764--30952	50	3.8	50	92	2	285	23	27	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31181--31370	65	3.0	62	77	6	209	27	24	13	34	1.92
31374--31529	68	2.3	67	87	1	213	26	21	12	39	1.89
33177--33214	20	1.9	20	88	0	58	39	13	2	44	1.57
37112--37210	28	3.5	27	81	8	117	16	15	25	43	1.86
37111--37183	29	2.6	28	86	2	101	16	16	23	43	1.87
45864--45937	27	2.7	28	82	2	96	39	24	16	20	1.92
50428--50479	6	8.5	6	83	12	70	34	3	0	61	1.14
50698--50761	31	2.1	31	88	5	94	21	26	25	26	2.00
50771--51087	161	2.0	162	89	4	489	30	21	17	30	1.96
50752--51121	162	2.3	161	85	6	516	31	19	19	29	1.96
55230--55390	32	5.0	32	78	0	151	34	21	19	24	1.96
59168--61033	944	2.0	924	90	3	2931	33	21	15	29	1.94
63049--63202	76	2.0	76	86	2	211	18	29	26	25	1.98

Tables:   1

The End!