Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022951.1 Corchorus olitorius cultivar O-4 contig22984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1321
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26


Found at i:115 original size:43 final size:42

Alignment explanation


    Indices: 1--145  Score: 213
    Period size: 43  Copynumber: 3.4  Consensus size: 42

                       *                                
          1 TATAACACAGGGGGCAATTCTATTACAAAGTCCTCAAACACATA
          1 TATAACACA-GAGGC-ATTCTATTACAAAGTCCTCAAACACATA

                                            *          
         45 TATAACACAGAGGCATT-TA-TATCAAAGTCCCCAAACACATA
          1 TATAACACAGAGGCATTCTATTA-CAAAGTCCTCAAACACATA

                      *                                
         86 TATAACACAGGGGCATCTCTATTACAAAGTCCTCAAACACATA
          1 TATAACACAGAGGCAT-TCTATTACAAAGTCCTCAAACACATA

                             
        129 TATAACACAGAGGCATT
          1 TATAACACAGAGGCATT

        146 TCTCCTTATG


Statistics
Matches: 92,  Mismatches: 5, Indels: 10
        0.86            0.05        0.09

Matches are distributed among these distances:
  40    2  0.02
  41   35  0.38
  42    5  0.05
  43   39  0.42
  44   11  0.12

ACGTcount: A:0.41, C:0.23, G:0.12, T:0.23


Consensus pattern (42 bp):   
TATAACACAGAGGCATTCTATTACAAAGTCCTCAAACACATA
Done.