Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022952.1 Corchorus olitorius cultivar O-4 contig22985, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2494
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31


Found at i:339 original size:36 final size:36

Alignment explanation


    Indices: 285--354  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        275 GAGATTTTGG

                    *    *      *               
        285 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATAATAACCAAAATCACAAAAAATGTAATA

                                       *      
        321 AGAAATATAATAACCAAAATCACAAAAGATGTAA
          1 AGAAATATAATAACCAAAATCACAAAAAATGTAA

        355 GGTTATTGAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21


Consensus pattern (36 bp):   
AGAAATATAATAACCAAAATCACAAAAAATGTAATA
Done.