genome.fa.s22955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022955.1 Corchorus olitorius cultivar O-4 contig22988, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91532

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2607--2684	41	1.9	41	94	0	138	38	19	19	23	1.93
4690--4774	42	2.0	42	90	4	136	30	11	30	27	1.92
13212--13485	98	2.9	95	93	3	478	41	14	15	29	1.86
33386--33438	26	2.0	26	88	3	79	39	41	0	18	1.51
42205--42273	31	2.3	31	84	2	86	24	18	30	26	1.98
46232--46279	3	16.0	3	100	0	96	33	0	33	33	1.58
53626--53675	3	16.7	3	100	0	100	66	0	0	34	0.92
53906--53947	3	14.0	3	81	18	52	33	28	35	2	1.70
54790--54926	56	2.4	57	88	1	195	33	17	20	28	1.95
55266--55334	30	2.3	30	90	7	106	31	27	14	26	1.95
56317--56375	23	2.5	23	76	15	57	40	3	1	54	1.27
62453--62478	2	13.0	2	100	0	52	50	0	0	50	1.00
64252--64354	51	2.0	50	96	1	188	41	9	10	37	1.73
69248--69367	22	5.5	22	79	15	115	40	11	10	37	1.75
69248--69366	44	2.7	45	82	7	129	41	11	10	36	1.75
69248--69435	22	8.6	21	74	9	78	36	15	10	38	1.81
69248--69406	66	2.4	65	79	10	171	39	14	9	36	1.78
69373--69454	42	1.9	43	82	2	103	24	21	8	45	1.80
69388--69447	22	2.8	22	85	5	70	20	23	10	46	1.80
71121--71147	1	27.0	1	100	0	54	0	0	0	100	0.00
75531--75566	4	9.0	4	100	0	72	75	0	0	25	0.81
86609--86850	100	2.3	106	84	9	311	40	7	9	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87307--87754	62	7.4	59	82	13	434	38	14	14	33	1.86
87307--87759	90	5.0	88	79	14	390	38	14	14	33	1.86
87311--87721	211	1.9	208	89	5	630	38	14	13	33	1.85

Tables:   1

The End!