Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022957.1 Corchorus olitorius cultivar O-4 contig22990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4480
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:90 original size:14 final size:14

Alignment explanation


    Indices: 71--103  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

         61 TAGGATAGAA

                          
         71 AATTGTTTGTTTTG
          1 AATTGTTTGTTTTG

                          
         85 AATTGTTTGTTTTG
          1 AATTGTTTGTTTTG

            *    
         99 GATTG
          1 AATTG

        104 ATTATTCCCC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.15, C:0.00, G:0.24, T:0.61


Consensus pattern (14 bp):   
AATTGTTTGTTTTG
Done.