Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022960.1 Corchorus olitorius cultivar O-4 contig22993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16048

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
288--330
10
4.3
10
81
0
50
83
11
4
0
0.78
400--469
26
2.6
27
93
2
115
38
27
21
12
1.90
912--962
25
2.0
25
96
0
93
29
25
0
45
1.54
3683--3891
68
3.1
68
97
0
391
22
21
18
37
1.94
4564--4687
24
5.2
24
78
7
135
21
9
54
13
1.67
4564--4687
48
2.6
48
90
0
203
21
9
54
13
1.67
4694--4840
42
3.5
42
90
1
215
20
14
50
14
1.78
4677--4846
84
2.0
84
85
2
225
20
15
50
14
1.77
4824--4870
24
2.0
24
86
0
67
25
14
55
4
1.58
4789--5035
66
3.8
66
94
1
410
22
13
52
11
1.72
4956--5002
24
2.0
24
91
0
76
27
12
55
4
1.56
4954--5006
24
2.4
21
77
17
61
24
15
54
5
1.62
5064--5134
33
2.2
32
82
7
83
21
8
54
15
1.67
4977--5192
120
1.8
120
91
0
333
18
11
57
12
1.63
5519--5555
16
2.2
17
86
13
51
43
8
13
35
1.74

Tables:   1

The End!