Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022961.1 Corchorus olitorius cultivar O-4 contig22994, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26803

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530--554
10
2.5
10
100
0
50
36
36
0
28
1.58
3004--3075
21
3.4
21
94
0
126
29
15
27
27
1.96
5827--5898
21
3.4
21
90
0
117
30
13
27
27
1.94
9846--9997
76
2.0
76
81
10
177
16
30
29
23
1.96
14608--14633
13
2.0
13
100
0
52
7
7
30
53
1.57
14630--14691
24
2.5
24
86
2
79
14
12
20
51
1.75
17501--18094
66
9.0
66
83
7
572
24
20
15
40
1.90
17501--18094
130
4.5
131
79
9
568
24
20
15
40
1.90
17501--18091
196
3.0
195
87
4
762
24
19
15
40
1.90
18859--18901
22
2.0
22
85
0
59
23
23
30
23
1.99
18931--18972
21
2.0
21
100
0
84
19
19
38
23
1.93
18859--19043
71
2.6
71
91
0
289
20
22
27
29
1.99
20939--21065
66
1.9
66
90
0
200
41
20
9
28
1.83
20891--21052
33
4.9
33
75
6
114
41
19
9
29
1.82
21450--21476
10
2.7
10
100
0
54
11
29
11
48
1.73
22163--22257
35
2.7
35
84
9
115
38
14
15
30
1.88
25588--25767
38
4.7
38
96
0
315
29
18
17
33
1.95

Tables:   1

The End!