Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022963.1 Corchorus olitorius cultivar O-4 contig22996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32


Found at i:835 original size:15 final size:15

Alignment explanation


    Indices: 815--846  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        805 CCTTGGGGGT

                           
        815 TCAAAATCAACAAGC
          1 TCAAAATCAACAAGC

                    *      
        830 TCAAAATCGACAAGC
          1 TCAAAATCAACAAGC

              
        845 TC
          1 TC

        847 CACTTAGTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.47, C:0.28, G:0.09, T:0.16


Consensus pattern (15 bp):   
TCAAAATCAACAAGC
Done.