Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022964.1 Corchorus olitorius cultivar O-4 contig22997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41642

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2142--2210
27
2.6
27
92
0
111
46
20
14
18
1.84
22285--22652
197
1.9
197
98
0
709
23
22
22
32
1.98
27034--27067
11
3.1
11
86
0
50
76
0
14
8
1.01
32380--32438
16
3.6
16
80
11
66
25
50
23
0
1.49
32390--32463
23
3.3
23
80
1
78
27
48
21
2
1.63
32406--32444
17
2.2
18
90
4
62
23
51
23
2
1.61
33355--33409
23
2.4
23
81
0
65
34
40
18
7
1.78
33398--33487
16
5.7
16
87
7
130
43
38
12
5
1.65
36349--36390
22
1.9
22
100
0
84
28
23
4
42
1.74
36877--37188
116
2.7
115
91
5
490
40
10
3
46
1.55
38612--38653
22
1.9
22
90
0
66
38
11
7
42
1.69
38617--38665
22
2.2
22
85
7
64
34
12
6
46
1.66

Tables:   1

The End!