Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022965.1 Corchorus olitorius cultivar O-4 contig22998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2255
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:1121 original size:2 final size:2

Alignment explanation


    Indices: 1114--1159  Score: 67
    Period size: 2  Copynumber: 23.5  Consensus size: 2

       1104 GATCCACTTG

                                                                *        *
       1114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TT TA TA TT
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                   
       1155 TA TA T
          1 TA TA T

       1160 TAAACACACC


Statistics
Matches: 39,  Mismatches: 4, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
   1    1  0.03
   2   38  0.97

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (2 bp):   
TA

Done.