Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022969.1 Corchorus olitorius cultivar O-4 contig23002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1817
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31


Found at i:1786 original size:51 final size:52

Alignment explanation


    Indices: 1685--1786  Score: 129
    Period size: 51  Copynumber: 2.0  Consensus size: 52

       1675 GTTCTTCATA

                                                     * **       
       1685 TTCTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCTTTTAGTGTTT
          1 TTCTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGTTT

                                           *                     
       1737 TTCT-CTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGTT
          1 TTCTCCTTGTTT-AGATCTTGTCTCCGGACAAACAAACACTCGTACA-GTGTT

       1787 CTTCATTCAG


Statistics
Matches: 44,  Mismatches: 4, Indels: 5
        0.83            0.08        0.09

Matches are distributed among these distances:
  50    2  0.05
  51   37  0.84
  52    5  0.11

ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40


Consensus pattern (52 bp):   
TTCTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGTTT
Done.