Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022972.1 Corchorus olitorius cultivar O-4 contig23005, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76774

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1261--1362
51
2.0
52
83
9
129
21
24
13
40
1.90
4145--4170
13
2.0
13
100
0
52
53
30
0
15
1.42
20691--20740
21
2.4
21
75
0
55
44
12
16
28
1.83
21074--21115
12
3.4
12
84
12
50
80
7
4
7
1.00
27340--27395
21
2.5
21
74
8
58
39
14
10
35
1.81
27353--27394
21
2.0
22
90
4
68
30
14
7
47
1.71
29076--29115
19
2.2
18
90
4
62
30
20
2
47
1.63
30864--30892
2
14.5
2
100
0
58
51
0
0
48
1.00
32811--33023
75
2.8
75
94
0
363
30
21
9
39
1.84
33171--33232
3
20.7
3
83
0
79
25
1
3
69
1.13
33178--33234
18
3.1
18
87
2
87
26
0
3
70
1.03
37815--37934
62
1.9
63
84
5
163
34
20
14
30
1.92
37864--37962
35
2.8
36
82
3
119
34
19
16
30
1.93
37861--37969
37
3.0
37
79
5
132
35
18
14
31
1.91
53453--53489
18
2.1
18
89
0
56
37
10
5
45
1.62
59815--59850
19
1.9
18
88
5
54
33
22
2
41
1.68
64031--64076
22
2.1
21
84
11
58
45
6
10
36
1.65

Tables:   1

The End!