Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022973.1 Corchorus olitorius cultivar O-4 contig23006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51648

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4083--4108
11
2.4
11
100
0
52
7
15
7
69
1.35
7707--7760
21
2.6
21
87
0
72
16
48
22
12
1.80
10233--10258
11
2.4
11
100
0
52
7
15
7
69
1.35
11628--11913
72
4.0
72
88
2
378
31
16
31
20
1.95
12108--12144
11
3.4
11
84
0
56
10
8
48
32
1.67
12314--12409
35
2.7
35
91
0
156
32
14
27
26
1.95
15247--15335
27
3.3
26
88
1
115
14
23
23
38
1.92
20045--20093
15
3.2
15
72
16
55
51
4
20
24
1.65
20891--20942
27
1.9
27
100
0
104
50
3
9
36
1.54
23876--23926
17
3.1
16
80
8
57
33
21
23
21
1.97
26614--26650
19
2.0
19
89
5
58
51
18
8
21
1.72
34852--34934
40
2.1
40
100
0
166
37
26
4
31
1.77
35092--35150
30
2.0
30
100
0
118
42
10
20
27
1.84
36189--36218
2
15.0
2
100
0
60
50
0
0
50
1.00
37007--37070
15
4.0
15
73
15
56
45
37
10
6
1.65
37001--37073
34
2.2
34
95
4
132
45
36
12
5
1.65
38864--38908
22
2.0
22
86
0
63
26
8
28
35
1.87
41422--41473
26
2.0
26
92
0
86
42
7
17
32
1.77
51229--51299
28
2.5
28
95
0
124
18
15
26
39
1.90

Tables:   1

The End!