Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022975.1 Corchorus olitorius cultivar O-4 contig23008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22022
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Found at i:9450 original size:27 final size:27
Alignment explanation
Indices: 9417--9487 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
9407 GGTCATTCAA
*
9417 GGGCATTTTGGTCATTTGCACATCCAG
1 GGGCATTTTAGTCATTTGCACATCCAG
*
9444 GGGCATTTTAGTCATTTGCACGTCCAG
1 GGGCATTTTAGTCATTTGCACATCCAG
*
9471 GGGCATTCTAGTCATTT
1 GGGCATTTTAGTCATTT
9488 TAAGTACACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.35
Consensus pattern (27 bp):
GGGCATTTTAGTCATTTGCACATCCAG
Found at i:14672 original size:7 final size:7
Alignment explanation
Indices: 14660--14684 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14650 CTGTTCCTTT
14660 TTCAGCA
1 TTCAGCA
14667 TTCAGCA
1 TTCAGCA
14674 TTCAGCA
1 TTCAGCA
14681 TTCA
1 TTCA
14685 CGTGCATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (7 bp):
TTCAGCA
Found at i:17536 original size:2 final size:2
Alignment explanation
Indices: 17523--17555 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
17513 TGCTTTCCAT
*
17523 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17556 TCTACTGTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17978 original size:16 final size:17
Alignment explanation
Indices: 17957--17992 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
17947 ACATGCTTTC
17957 AAAAAA-GATTTTTCAA
1 AAAAAATGATTTTTCAA
*
17973 AAAAAATGGTTTTTCAA
1 AAAAAATGATTTTTCAA
17990 AAA
1 AAA
17993 TGGTTTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (17 bp):
AAAAAATGATTTTTCAA
Found at i:17991 original size:14 final size:13
Alignment explanation
Indices: 17974--18014 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
17964 ATTTTTCAAA
17974 AAAAATGGTTTTTC
1 AAAAATGG-TTTTC
17988 AAAAATGGTTTTC
1 AAAAATGGTTTTC
* *
18001 AAAATTTGTTTTC
1 AAAAATGGTTTTC
18014 A
1 A
18015 CGAGGATGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 17 0.68
14 8 0.32
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (13 bp):
AAAAATGGTTTTC
Found at i:18655 original size:10 final size:10
Alignment explanation
Indices: 18636--18668 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
18626 AAATGCAAAA
18636 AAAAAT-AAT
1 AAAAATAAAT
18645 AAAAATAAAT
1 AAAAATAAAT
18655 -AAAATAAAT
1 AAAAATAAAT
18664 AAAAA
1 AAAAA
18669 AAGTGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:19609 original size:26 final size:26
Alignment explanation
Indices: 19569--19633 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
19559 TTGCGAAAAG
*
19569 TTTTACTTCAGTTGATCCAGGGCGATC
1 TTTTA-TTCAATTGATCCAGGGCGATC
19596 TTTTATTCAATTGATCCAGGGCGATC
1 TTTTATTCAATTGATCCAGGGCGATC
**
19622 TTTCCTTCAATT
1 TTTTATTCAATT
19634 TATTTCAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
26 30 0.86
27 5 0.14
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.42
Consensus pattern (26 bp):
TTTTATTCAATTGATCCAGGGCGATC
Found at i:19671 original size:35 final size:35
Alignment explanation
Indices: 19597--20242 Score: 749
Period size: 35 Copynumber: 18.1 Consensus size: 35
19587 AGGGCGATCT
*
19597 TTTA-TTCAATTGATCCAGGGCGATCTTTCCTTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTT-CTTCAA
* * * * *
19632 TTTATTTCAGTTGA-CCTAGGGAGGTCCTTATTCAG
1 TTTATTTCAGTTGATCC-AGGGCGATCTTTCTTCAA
*
19667 TTTATTTCAGTTGATCCAGGGCAATCTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
* **
19702 TTTATTTCAGTTGATCCAGGGCGGTCTTTCTTCCC
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
* *
19737 TTTATTTCAGTTGATCTAGGGCGATATTTTCTTCATCA
1 TTTATTTCAGTTGATCCAGGGCGAT-CTTTCTTCA--A
* * * * * *
19775 CTTTATTTCGATTTGA-CCTAGGGTGGTCCTTATTCAG
1 -TTTATTTC-AGTTGATCC-AGGGCGATCTTTCTTCAA
* * * * *
19812 TTTATTTCAAGTTGACCCAAGGCGGTCTTTCTCCAG
1 TTTATTTC-AGTTGATCCAGGGCGATCTTTCTTCAA
* *
19848 TTCATTTCAATTGATCCAGGGCGATCTTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGCGATC-TTTCTTCAA
* * * *
19884 TTTATTTTAGTTGATCCAGGGTGATCTCTCCTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
* *
19919 TTTATTTCAGTTGATCTAGGGCGATCTATTATTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCT-TTCTTCAA
19955 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
*
19990 TTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
1 TTTATTTCAGTTGATCCAGGGCGAT-CTTTCTTCAA
* ** * *
20026 TTTATTTCGGTTGATCCAGGGTTATCTCTCCTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
* * *
20061 CTTACTTCAGTTGATCCAGGGTGATCTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
*
20096 TTTATTTCAGTTGATCCAGGGCGATCTTTTCTTCAG
1 TTTATTTCAGTTGATCCAGGGCGATC-TTTCTTCAA
20132 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
* *
20167 TTTATTTCAGTTGATCCAGGGCGGTCTTTCTTCCA
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
*
20202 TTTATTTCAGTTGATCCAGGGCGATCTTTTCTTCAG
1 TTTATTTCAGTTGATCCAGGGCGATC-TTTCTTCAA
20238 TTTAT
1 TTTAT
20243 CTAGGGCGAT
Statistics
Matches: 516, Mismatches: 80, Indels: 29
0.83 0.13 0.05
Matches are distributed among these distances:
35 292 0.57
36 196 0.38
37 2 0.00
39 15 0.03
40 11 0.02
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (35 bp):
TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAA
Found at i:19933 original size:71 final size:70
Alignment explanation
Indices: 19597--20242 Score: 715
Period size: 71 Copynumber: 9.1 Consensus size: 70
19587 AGGGCGATCT
* * * *
19597 TTTA-TTCAATTGATCCAGGGCGATCTTTCCTTCAATTTATTTCAGTTGA-CCTAGGGAGGTCCT
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCC-TCAATTTATTTCAGTTGATCC-AGGGCGATCTT
* *
19660 TATTCAG
64 TCTTCAA
* * *
19667 TTTATTTCAGTTGATCCAGGGCAATCTTTCTTCAATTTATTTCAGTTGATCCAGGGCGGTCTTTC
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTTC
**
19732 TTCCC
66 TTCAA
* * * * * *
19737 TTTATTTCAGTTGATCTAGGGCGATATTTTCTTCATCACTTTATTTCGATTTGA-CCTAGGGTGG
1 TTTATTTCAGTTGATCCAGGGCGAT-CTTTC--C-TCAATTTATTTC-AGTTGATCC-AGGGCGA
* * *
19801 TCCTTATTCAG
60 TCTTTCTTCAA
* * * * * *
19812 TTTATTTCAAGTTGACCCAAGGCGGTCTTT-CTCCAGTTCATTTCAATTGATCCAGGGCGATCTT
1 TTTATTTC-AGTTGATCCAGGGCGATCTTTCCT-CAATTTATTTCAGTTGATCCAGGGCGATC-T
19876 TTCTTCAA
63 TTCTTCAA
* * * *
19884 TTTATTTTAGTTGATCCAGGGTGATCTCTCCTCAATTTATTTCAGTTGATCTAGGGCGATCTATT
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCT-TT
*
19949 ATTCAA
65 CTTCAA
*
19955 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAATTTATTTCAGTTGATCCAGGGCGATCCTTT
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGAT-CTTT
*
20020 CTTCAG
65 CTTCAA
* ** * * * *
20026 TTTATTTCGGTTGATCCAGGGTTATCTCTCCTCAACTTACTTCAGTTGATCCAGGGTGATCTTTC
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTTC
20091 TTCAA
66 TTCAA
* *
20096 TTTATTTCAGTTGATCCAGGGCGATCTTTTCTTCAGTTTATTTCAGTTGATCCAGGGCGATCTTT
1 TTTATTTCAGTTGATCCAGGGCGATC-TTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTT
20161 CTTCAA
65 CTTCAA
* * *
20167 TTTATTTCAGTTGATCCAGGGCGGTCTTTCTTCCATTTATTTCAGTTGATCCAGGGCGATCTTTT
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATC-TTT
*
20232 CTTCAG
65 CTTCAA
20238 TTTAT
1 TTTAT
20243 CTAGGGCGAT
Statistics
Matches: 487, Mismatches: 72, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
70 124 0.25
71 279 0.57
72 29 0.06
74 13 0.03
75 29 0.06
76 13 0.03
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (70 bp):
TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTTC
TTCAA
Found at i:20070 original size:106 final size:106
Alignment explanation
Indices: 19597--20242 Score: 739
Period size: 106 Copynumber: 6.0 Consensus size: 106
19587 AGGGCGATCT
* * * *
19597 TTTA-TTCAATTGATCCAGGGCGATCTTTCCTTCAATTTATTTCAGTTGA-CCTAGGGAGGTCCT
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCC-TCAATTTATTTCAGTTGATCC-AGGGCGATCTT
* * * *
19660 TATTCAGTTTATTTCAGTTGATCCAGGGCAAT-CTTTCTTCAA
64 TCTTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
* * ** * *
19702 TTTATTTCAGTTGATCCAGGGCGGTCTTTCTTCCCTTTATTTCAGTTGATCTAGGGCGATATTTT
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGAT-CTTT
* * * *
19767 CTTCATCACTTTATTTCGATTTGA-CCTAGGGTGGTCC-TTATTCAG
65 CTTCA--A-TTTATTTC-AGTTGATCC-AGGGCGATCCTTTCTTCAG
* * * * * *
19812 TTTATTTCAAGTTGACCCAAGGCGGTCTTT-CTCCAGTTCATTTCAATTGATCCAGGGCGATCTT
1 TTTATTTC-AGTTGATCCAGGGCGATCTTTCCT-CAATTTATTTCAGTTGATCCAGGGCGATC-T
* * * * *
19876 TTCTTCAATTTATTTTAGTTGATCCAGGGTGAT-CTCTCCTCAA
63 TTCTTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
* **
19919 TTTATTTCAGTTGATCTAGGGCGATCTATTATTCAATTTATTTCAGTTGATCCAGGGCGATCTTT
1 TTTATTTCAGTTGATCCAGGGCGATCT-TTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTT
19984 CTTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
65 CTTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
* ** * * * *
20026 TTTATTTCGGTTGATCCAGGGTTATCTCTCCTCAACTTACTTCAGTTGATCCAGGGTGATCTTTC
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTTC
*
20091 TTCAATTTATTTCAGTTGATCCAGGGCGATCTTTTCTTCAG
66 TTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
* *
20132 TTTATTTCAGTTGATCCAGGGCGATCTTTCTTCAATTTATTTCAGTTGATCCAGGGCGGTCTTTC
1 TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTTC
* *
20197 TTCCATTTATTTCAGTTGATCCAGGGCGATCTTTTCTTCAG
66 TTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
20238 TTTAT
1 TTTAT
20243 CTAGGGCGAT
Statistics
Matches: 456, Mismatches: 68, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
105 26 0.06
106 251 0.55
107 82 0.18
108 10 0.02
109 11 0.02
110 25 0.05
111 51 0.11
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.43
Consensus pattern (106 bp):
TTTATTTCAGTTGATCCAGGGCGATCTTTCCTCAATTTATTTCAGTTGATCCAGGGCGATCTTTC
TTCAATTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAG
Found at i:20239 original size:26 final size:26
Alignment explanation
Indices: 20207--20259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20197 TTCCATTTAT
20207 TTCAGTTGATCCAGGGCGATCTTTTC
1 TTCAGTTGATCCAGGGCGATCTTTTC
* *
20233 TTCAGTTTATCTAGGGCGATCTTTTC
1 TTCAGTTGATCCAGGGCGATCTTTTC
20259 T
1 T
20260 GGAGTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (26 bp):
TTCAGTTGATCCAGGGCGATCTTTTC
Found at i:20265 original size:26 final size:26
Alignment explanation
Indices: 20209--20268 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
20199 CCATTTATTT
* *
20209 CAGTTGATCCAGGGCGATCTTTTCTT
1 CAGTTTATCCAGGGCGATCTTTTCTG
*
20235 CAGTTTATCTAGGGCGATCTTTTCTG
1 CAGTTTATCCAGGGCGATCTTTTCTG
*
20261 GAGTTTAT
1 CAGTTTAT
20269 TTCAGTTGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (26 bp):
CAGTTTATCCAGGGCGATCTTTTCTG
Found at i:20522 original size:69 final size:68
Alignment explanation
Indices: 20430--20657 Score: 348
Period size: 70 Copynumber: 3.2 Consensus size: 68
20420 GCGAATACTC
20430 AGGCTTTTCCACAAGCAAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTCCATCCAAGCC
1 AGGCTTTTCCACAAGC-AAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTCCATCCAAGCC
20495 ACAT
65 ACAT
20499 AGGCTTTTTCCACAAGCAAACTCGTTTCCATACGAGTCATGTTTAAGCCTTGGTTCCATCCAAGC
1 AGGC-TTTTCCACAAGCAAACTCGTTTCCATACGAGTCA-GTTTAAGCCTTGGTTCCATCCAAGC
20564 CACAT
64 CACAT
* *
20569 AGGCTTTTCCACAAGCCAAACTCTTTTTCCACACGAGTCAGTTTAAGCCTTGGTTTCCATCCAAG
1 AGGCTTTTCCACAAG-CAAACTC-GTTTCCATACGAGTCAGTTTAAGCCTTGG-TTCCATCCAAG
*
20634 CCATAT
63 CCACAT
*
20640 AAAGGCTTTTCCATAAGC
1 --AGGCTTTTCCACAAGC
20658 CAAGTTTAAT
Statistics
Matches: 148, Mismatches: 4, Indels: 11
0.91 0.02 0.07
Matches are distributed among these distances:
69 37 0.25
70 66 0.45
71 30 0.20
72 1 0.01
73 14 0.09
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (68 bp):
AGGCTTTTCCACAAGCAAACTCGTTTCCATACGAGTCAGTTTAAGCCTTGGTTCCATCCAAGCCA
CAT
Found at i:20989 original size:38 final size:38
Alignment explanation
Indices: 20947--21020 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
20937 ACTTTATCAG
*
20947 TTTATTTCGATCCTGGTTTAGGATCATTGCGTTATTGC
1 TTTATTTCAATCCTGGTTTAGGATCATTGCGTTATTGC
* * *
20985 TTTATTTTAATCCTGGTTTAGGATCTTTGCTTTATT
1 TTTATTTCAATCCTGGTTTAGGATCATTGCGTTATT
21021 TTAATCCTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.16, C:0.14, G:0.18, T:0.53
Consensus pattern (38 bp):
TTTATTTCAATCCTGGTTTAGGATCATTGCGTTATTGC
Found at i:21015 original size:30 final size:30
Alignment explanation
Indices: 20980--21046 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
20970 TCATTGCGTT
*
20980 ATTGCTTTATTTTAATCCTGGTTTAGGATC
1 ATTGCTTTATTTTAATCCTGGTTGAGGATC
*
21010 TTTGCTTTATTTTAATCCTGGTTGAGGATC
1 ATTGCTTTATTTTAATCCTGGTTGAGGATC
21040 ATTGCTT
1 ATTGCTT
21047 AGGATCACTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.51
Consensus pattern (30 bp):
ATTGCTTTATTTTAATCCTGGTTGAGGATC
Found at i:21124 original size:30 final size:30
Alignment explanation
Indices: 21079--21155 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 30
21069 CTAGTTTATC
* *
21079 GCTTCATTCTAATCCTGGCTGAAGATCAAT
1 GCTTTATTTTAATCCTGGCTGAAGATCAAT
* * *
21109 GCTTTATTTTAATCCTGGTTGAGGATCAGT
1 GCTTTATTTTAATCCTGGCTGAAGATCAAT
* *
21139 ACTTTATTTCAATCCTG
1 GCTTTATTTTAATCCTG
21156 ATTTAGGATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40
Consensus pattern (30 bp):
GCTTTATTTTAATCCTGGCTGAAGATCAAT
Found at i:21640 original size:27 final size:27
Alignment explanation
Indices: 21610--21676 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
21600 ATTCAAGGGC
*
21610 ATTTTGGTCATTTGCACATCCAGGGGA
1 ATTTTAGTCATTTGCACATCCAGGGGA
* *
21637 ATTTTAGTCATTTGCACGTCCAGGGGC
1 ATTTTAGTCATTTGCACATCCAGGGGA
*
21664 ATTCTAGTCATTT
1 ATTTTAGTCATTT
21677 TAAGTTCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (27 bp):
ATTTTAGTCATTTGCACATCCAGGGGA
Done.