Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022978.1 Corchorus olitorius cultivar O-4 contig23011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60353

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4647--4801
44
3.7
43
85
7
194
45
9
15
29
1.77
16914--17007
31
3.0
31
88
1
107
31
23
21
23
1.98
16937--17007
31
2.3
31
100
0
142
33
22
19
23
1.97
16811--17136
156
2.1
156
92
1
537
35
17
17
29
1.93
16968--17230
125
2.1
125
89
1
402
35
18
16
29
1.93
17124--17324
94
2.1
94
95
0
366
36
19
14
29
1.92
17583--17639
28
2.1
26
87
6
78
26
22
5
45
1.73
19752--19912
85
1.9
85
96
0
295
31
8
16
43
1.78
20666--20739
27
2.7
27
97
2
139
14
8
25
51
1.70
21400--21529
32
4.0
32
82
1
134
26
21
23
28
1.99
34282--34507
29
7.8
29
75
11
178
38
21
19
20
1.93
34282--34562
57
4.8
57
77
6
219
42
19
18
19
1.90
34329--34562
86
2.7
87
84
6
267
43
19
17
20
1.89
34372--34562
29
6.5
30
77
10
132
46
17
16
19
1.85
34302--34562
116
2.2
115
82
7
294
42
19
18
19
1.90
37879--37921
22
2.0
22
85
0
59
27
32
20
18
1.96
42260--42588
41
7.8
43
82
10
385
20
10
25
42
1.85
42258--42588
84
3.9
85
93
2
537
21
10
25
42
1.85
44317--44388
28
2.6
28
95
0
126
13
15
25
45
1.83
53398--53450
24
2.2
24
89
0
79
49
18
18
13
1.80
54424--54510
31
2.8
31
98
0
165
29
29
21
18
1.97
56431--56479
21
2.3
21
82
6
55
40
16
28
14
1.87

Tables:   1

The End!