Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002298.1 Corchorus olitorius cultivar O-4 contig02298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5231
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29


Found at i:3474 original size:85 final size:85

Alignment explanation


    Indices: 3331--3488  Score: 253
    Period size: 85  Copynumber: 1.9  Consensus size: 85

       3321 AGCTTAAAAT

                  *    *                                      *              
       3331 TTCTAGTTTCTGCTTCAGGCGTTAGTCCCACTAAGACTAGCTTCTCTCTTGATGTCCCGAACTAA
          1 TTCTAGATTCTACTTCAGGCGTTAGTCCCACTAAGACTAGCTTCTCTCTTAATGTCCCGAACTAA

                                
       3396 GCCTTCTTTTAACTTGTATC
         66 GCCTTCTTTTAACTTGTATC

                                       **       *        *                   
       3416 TTCTAGATTCTACTTCAGGCGTTAGTCTTACTAAGATTAGCTTCTGTCTTAATGTCCCGAACTAA
          1 TTCTAGATTCTACTTCAGGCGTTAGTCCCACTAAGACTAGCTTCTCTCTTAATGTCCCGAACTAA

                    
       3481 GCCTTCTT
         66 GCCTTCTT

       3489 CAATCTCCAT


Statistics
Matches: 66,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  85   66  1.00

ACGTcount: A:0.20, C:0.25, G:0.15, T:0.39


Consensus pattern (85 bp):   
TTCTAGATTCTACTTCAGGCGTTAGTCCCACTAAGACTAGCTTCTCTCTTAATGTCCCGAACTAA
GCCTTCTTTTAACTTGTATC
Done.