genome.fa.s22984.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022984.1 Corchorus olitorius cultivar O-4 contig23017, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109116

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2914--3007	45	2.2	42	86	7	127	40	19	4	36	1.71
8751--8802	25	2.1	25	100	0	104	28	15	7	48	1.73
8935--8995	31	2.0	31	87	6	90	63	0	1	34	1.04
10483--10532	25	2.0	26	96	4	93	54	4	4	38	1.38
29968--30266	121	2.5	121	88	2	438	39	23	8	28	1.84
30984--31133	73	2.1	73	100	0	300	38	14	6	40	1.72
36566--36745	25	7.3	25	89	1	256	27	32	22	16	1.96
37606--37645	2	20.0	2	84	0	53	42	0	7	50	1.30
37609--37645	14	2.6	14	95	0	65	40	0	8	51	1.32
42101--42175	37	2.0	37	94	0	132	49	10	24	16	1.76
42747--42927	25	7.3	25	87	1	238	27	31	21	19	1.98
46407--46661	138	1.9	134	89	6	397	33	19	7	39	1.81
46719--46757	18	2.4	16	87	12	53	17	41	38	2	1.64
57084--57132	21	2.4	22	86	10	68	51	4	0	44	1.20
58355--58393	14	2.9	13	80	3	51	53	2	2	41	1.28
58379--58632	122	2.0	127	90	6	401	49	1	11	37	1.49
90620--90646	5	5.4	5	100	0	54	18	0	0	81	0.69
90949--91009	28	2.2	28	93	0	104	13	19	24	42	1.87
100485--100578	45	2.2	42	83	7	127	36	6	20	37	1.78
100778--100963	103	1.8	103	100	0	372	41	12	8	37	1.73
100907--101018	53	2.1	53	98	0	215	49	17	9	23	1.77
104989--105050	27	2.3	27	83	8	72	43	3	9	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107754--107834	22	3.8	21	83	1	90	37	8	13	40	1.75
107734--107834	43	2.3	44	84	1	123	35	8	14	40	1.78

Tables:   1

The End!