Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022985.1 Corchorus olitorius cultivar O-4 contig23018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90620

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2115--2143
14
2.1
14
100
0
58
20
13
27
37
1.91
6028--6200
86
2.0
86
96
2
321
29
15
19
35
1.93
13579--13607
2
14.5
2
100
0
58
51
0
0
48
1.00
13820--13912
47
2.0
48
89
6
147
34
13
13
37
1.85
14180--14221
2
20.5
2
95
4
75
50
2
0
47
1.14
14891--14962
34
2.1
35
94
2
128
51
2
13
31
1.56
15014--15168
51
3.0
53
96
3
296
47
11
1
39
1.51
15854--15887
16
2.1
16
94
0
59
35
5
20
38
1.77
31480--31514
15
2.3
15
90
0
52
57
8
25
8
1.57
38188--38277
45
2.0
45
95
0
162
28
17
24
28
1.97
40617--40658
21
2.0
22
85
4
59
9
21
28
40
1.84
43711--43754
12
3.8
12
82
11
65
20
31
9
38
1.84
46281--46333
26
2.0
27
96
3
99
30
33
15
20
1.93
83140--83264
22
5.7
22
71
16
73
39
12
8
40
1.73
83279--83317
20
2.0
20
90
10
62
23
20
10
46
1.81
83272--83343
21
3.5
19
80
12
65
26
16
9
47
1.78
85243--85290
21
2.3
21
85
7
62
54
8
0
37
1.31
86040--86141
31
3.4
29
71
18
84
29
16
5
48
1.70
86651--86837
95
2.0
95
97
0
356
34
6
22
36
1.80
88749--88788
6
6.5
6
88
5
53
15
5
0
80
0.88
88760--88791
13
2.5
13
89
0
55
15
6
0
78
0.95
89370--89450
40
2.0
41
92
4
137
18
23
9
48
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90482--90525
22
2.0
23
95
4
81
18
13
52
15
1.75

Tables:   1

The End!